Description of vb

DESCRIPTION

 Display message WITH new line.

 This function shows a message on the MATLAB console. The message is
 automatically suppressed according to vbmeg_inst.verbose_level. 

 [syntax]
 vb_disp(message,verbose_level_min)

 [input]
 message          : <<string>> Message be shown. 
 verbose_level_min: <optional> <<int or string>> Verbose level of this
                    message. 
 --- verbose level string (verbose_level_min)
   'NONE' (=0)      Suppressing all messages 
   'EMERGENCY' (=1)
   'WARNING' (=2)
   'NOTICE' (=3)    VBMEG default value
   'INFO' (=5)
   'DEBUG' (=10)    Displaying all messages
 ---

 [example]
 >> vb_disp('message\n'); % same with below
 >> vb_disp('message\n','NOTICE'); % default=NOTICE
 >> vb_disp('message\n',3); % 3 is NOTICE

 exmaple of message suppression
 >> vb_set_verbose('WARNING'); % making verbose level low
 >> vb_disp('message\n'); % same with the 1st line but none is shown

 [history]
 2008-12-02 Taku Yoshioka
 2011-06-20 taku-y
 [enhancement] String input argument supported. 
 2011-06-28 rhayashi message is shown by using disp() function.

 [see also]
    vb_set_verbose, vb_get_verbose, vb_disp_nonl

 Copyright (C) 2011, ATR All Rights Reserved.
 License : New BSD License(see VBMEG_LICENSE.txt)

CROSS-REFERENCE INFORMATION

vb_define_verbose Set constants for verbose level

test_job_brain Test job_brain.m, a sample program of VBMEG

test_job_current Test job_current.m, a sample program of VBMEG.

test_job_fmri Test job_fmri.m, a sample program of VBMEG

test_job_inflate Test job_inflate.m, a sample program of VBMEG

test_job_leadfield Test job_leadfield.m, a sample program of VBMEG

test_job_meg Test job_meg.m, a sample program of VBMEG

test_job_vb Test job_vb.m, a sample program of VBMEG.

test_job_vbfilter Test job_vbfilter.m, a sample program of VBMEG.

test_vb_calc_current Test vb_calc_current.m, a sample program of VBMEG.

vb_calc_patch_area --- get area of patches

vb_make_brain_data2 Make cortex data from BrainVoyager/FreeSurfer files

vb_make_brain_mni Make cortex data from MNI standard brain for group analysis

vb_make_brain_std Make cortex data for MNI standard brain

vb_make_inflate_data Incorporate inflated model of Brain Voyager/FreeSurfer.

vb_original_normal_statics Find original vertex near the cortical vertex

vb_parent_std_brain_file_get get template standard brain file path of specified brain_file.

vb_reduce_cortex Make new cortex model with reduced resolution

vb_add_act This function is used to register cortical activity data.

vb_add_area This function is used to register cortical area data.

vb_load_orig_brain_surf Load BrainVoyager/FreeSurfer files

vb_load_sensor Load sensor position, sensor direction, weight of MEG (meg.mat) and EEG (eeg.mat).

vb_load_cortex load cortex vertex coordinate from brain file

vb_load_current load estimated current

vb_load_meg_data load measured data of MEG (meg.mat) and EEG (eeg.mat).

vb_fsave Save variables into mat-file by MATLAB version 6 format. (Overwrite mode)

vb_save Save variables into mat-file by MATLAB version 6 format. (Append mode)

vb_save_struct save the fields of "struct_obj" as individual variables

vb_savefig_as_shown Save figure as it is shown

vb_read_ch_data_eeg read experiment data from channel binary data file

vb_megfile_get_sensor_position_by_type return information of sensor position

vb_areafile_add_dmri_area Add parcellation area to the specified area file.

vb_current_reconstruct_z_dynamics Current reconstruction using Bayesian inverse filter.

vb_calc_current Current reconstruction using Bayesian inverse filter

vb_current_reconstruct_z Current reconstruction using Bayesian inverse filter.

vb_current_reconstruct_z_tr Current reconstruction using Bayesian inverse filter.

vb_get_megdata Get megdata for VB estimate;

vb_observation_noise_specification Specify observation noise covariance structure and its magnitude

vb_prepare_leadfield PREPARE LEADFIELD MATRICES

vbmeg_current_filter_z Calculate Hierarchical Bayesian inverse filter

vbmeg_current_reconstruct_z Current reconstruction using Bayesian inverse filter.

vbmeg_current_reconstruct_z_tr Current reconstruction using Bayesian inverse filter.

vbmeg_multi_fmri Bayesian Wiener estimation for MEG.

vb_make_fmri_data Make fMRI activity data from SPM voxel file.

vb_batch_job_mkdir Make directories.

vb_signal_processor_apply_processing Apply filters to input_files and put output_files.

vb_signal_processor_batch_exec run batch signal processing.

vb_trial_extractor_extract_trial This function extracts trials based on parameters.

vb_trial_extractor_output_file Create trial MEG/EEG-MAT file.

vb_trial_extractor_tag_by_file tag trials by file.

vb_continuous_file_extract_trial Extract trial list for each trigger.

job_plot_cmap_get_spatialpattern Get spatial pattern of data using current TOI and FOI.

job_plot_cmap_load_data Open file dialog and load data.

job_plot_cmap_print_spatialpattern Update spatial pattern of cortical activities (estimated current)

job_plot_cmap_spatial_peak Update spatial pattern.

job_plot_currentmap Plot spatio-temporal pattern of estimated current.

vb_job_brain_add_mni_tal_coord Add MNI and Talairach coordinate value to Cortical model file.

vb_job_brain_add_sphcoord Import FreeSurfer's sphere coordinate into cortical surface file.

vb_job_brain_subj Make whole brain data (cortex sheet) by reducing BV/FS surface data.

vb_job_ersp Calculate ERSP for cortical current.

vb_job_inflate Make inflated cortical surface model.

vb_job_itpc Calculate ITPC for cortical current.

vb_job_reduced_cortex Make reduced cortex without corpus region

vb_make_inflate_data Incorporate inflated model of Brain Voyager/FreeSurfer.

vb_job_brain Convert FreeSurfer data to VBMEG format.

vb_job_current Estimate current time course by using inverse filter.

vb_job_current_dynamics Estimate current time course by using inverse filter.

vb_job_head_3shell Make 1 shell or 3 shell surface model for MEG/EEG

vb_job_leadfield Calculate leadfield matrix and create leadfiled file (.basis.mat).

vb_job_meg Import M/EEG data and create MEG-MAT (.meg.mat) or EEG-MAT (.eeg.mat) file.

vb_job_vb Estimate parameters of hierarchical Bayse model using variational Bayes

vb_job_vb_dynamics Jointly estimate source activities and interactions

vb_job_vbfilter Calculate inverse filter for current estimation.

vb_check_mni_coregistration Check tool for MNI coordinate value corresponding to personal brain.

vb_plot_cortex Plot cortical surface model.

dmri_cortex_parcel Get indices of parcellated brain

dmri_cortex_parcel_from_area Get indices of parcellated brain

vb_current_reconstruct_z_meeg Current reconstruction using Bayesian inverse filter.

vb_current_reconstruct_z_tr_meeg Current reconstruction using Bayesian inverse filter.

vb_job_current_meeg Estimate current time course by using inverse filter.

vb_job_vb_meeg Estimate parameters of hierarchical Bayse model using variational Bayes

vb_job_vbfilter_meeg Calculate inverse filter for current estimation.

vbmeg_current_filter_z_meeg Calculate Hierarchical Bayesian inverse filter for MEG+EEG

make_std_brain_model Make standard brain from ICBM152

SOURCE CODE

0001 function vb_disp(message,verbose_level_min)
0002 % Display message WITH new line.
0003 %
0004 % This function shows a message on the MATLAB console. The message is
0005 % automatically suppressed according to vbmeg_inst.verbose_level.
0006 %
0007 % [syntax]
0008 % vb_disp(message,verbose_level_min)
0009 %
0010 % [input]
0011 % message          : <<string>> Message be shown.
0012 % verbose_level_min: <optional> <<int or string>> Verbose level of this
0013 %                    message.
0014 % --- verbose level string (verbose_level_min)
0015 %   'NONE' (=0)      Suppressing all messages
0016 %   'EMERGENCY' (=1)
0017 %   'WARNING' (=2)
0018 %   'NOTICE' (=3)    VBMEG default value
0019 %   'INFO' (=5)
0020 %   'DEBUG' (=10)    Displaying all messages
0021 % ---
0022 %
0023 % [example]
0024 % >> vb_disp('message\n'); % same with below
0025 % >> vb_disp('message\n','NOTICE'); % default=NOTICE
0026 % >> vb_disp('message\n',3); % 3 is NOTICE
0027 %
0028 % exmaple of message suppression
0029 % >> vb_set_verbose('WARNING'); % making verbose level low
0030 % >> vb_disp('message\n'); % same with the 1st line but none is shown
0031 %
0032 % [history]
0033 % 2008-12-02 Taku Yoshioka
0034 % 2011-06-20 taku-y
0035 % [enhancement] String input argument supported.
0036 % 2011-06-28 rhayashi message is shown by using disp() function.
0037 %
0038 % [see also]
0039 %    vb_set_verbose, vb_get_verbose, vb_disp_nonl
0040 %
0041 % Copyright (C) 2011, ATR All Rights Reserved.
0042 % License : New BSD License(see VBMEG_LICENSE.txt)
0043 
0044 global vbmeg_inst;
0045 const = vb_define_verbose;
0046 
0047 if nargin<2 || isempty(verbose_level_min), 
0048   verbose_level_min = const.VERBOSE_LEVEL_NOTICE;
0049 end
0050 
0051 if ischar(verbose_level_min)
0052   switch verbose_level_min
0053    case 'NONE'
0054     verbose_level_min = 0;
0055    case 'EMERGENCY'
0056     verbose_level_min = 1;
0057    case 'WARNING'
0058     verbose_level_min = 2;
0059    case 'NOTICE'
0060     verbose_level_min = 3;
0061    case 'INFO'
0062     verbose_level_min = 5;
0063    case 'DEBUG'
0064     verbose_level_min = 10;
0065    otherwise
0066     fprintf('Invalid verbose string: %s\n',verbose_level_min);
0067   end
0068 end
0069 
0070 if isempty(vbmeg_inst) || ~isfield(vbmeg_inst,'verbose_level')
0071   verbose_level = const.VERBOSE_LEVEL_NOTICE;
0072 else
0073   verbose_level = vbmeg_inst.verbose_level;
0074 end
0075 
0076 if verbose_level>=verbose_level_min
0077   disp([const.verbose_level_str{verbose_level_min+1} message]);
0078 end

vb_disp

PURPOSE

SYNOPSIS

DESCRIPTION

CROSS-REFERENCE INFORMATION

SOURCE CODE