vb_save

PURPOSE

SYNOPSIS

DESCRIPTION

 Save variables into mat-file by MATLAB version 6 format. (Append mode)
   vb_save(filename, 'V', 'XX', ... )
 [IN]  varargin : variable name string. (varargin{1} = filename)
 [OUT] result   : SUCCESS or FAILURE;
 
 Example:
  vb_save(filename, 'V', 'XX', ... )
 Memo:
  if specified file already exists, variable will be appended to the file.
   @see vbmeg.m where "vbmeg_saving_version" is set
 History:
   ****-**-** (****) initial version
   2009-07-06 (Sako) changed specification of the default version

 Copyright (C) 2011, ATR All Rights Reserved.
 License : New BSD License(see VBMEG_LICENSE.txt)

CROSS-REFERENCE INFORMATION

• vb_disp Display message WITH new line.
• vb_get_file_parts return path, name, extension, and version of file
• vb_mkdir compatible mkdir for MATLAB6 or MATLAB7,8
• FAILURE
• SUCCESS

• make_sbi_meg_data Read MEG data saved on SBI system and convert it to .meg.mat file.
• vb_job_load_vivid vb_job_load_vivid
• vb_job_vivid_marker vb_job_vivid_marker
• vb_script_atlas2vb Template script of how to run "atlas2vb"
• combine_trial_eeg Combine trials across runs
• combine_trial_meg Combine trials across runs
• common_average_eeg Take common average
• correct_baseline_eeg Correct baseline of EEG data
• correct_baseline_meg Correct baseline of MEG data
• detect_blink_from_eog Detect trials in which blinks occurred for visual task
• import_blink_from_eeg Import blink information from EEG data to MEG data
• make_trial_eeg Make trial data
• make_trial_meg Make trial data
• prepare_leadfield_eeg Prepare leadfield matrix
• regress_out_eog_from_eeg Regress out EOG components from EEG data
• regress_out_eog_from_meg Regress out EOG components from MEG data
• remove_noise_ic_eeg Remove noise ICs from EEG data
• remove_noise_ic_meg Remove noise ICs from MEG data
• common_average_eeg Take common average
• correct_baseline_eeg Correct baseline of EEG data
• detect_blink_from_eog Detect trials in which blinks occurred for visual task
• import_blink_from_eeg Import blink information from EEG data to MEG data
• prepare_leadfield_eeg Prepare leadfield matrix
• regress_out_eog_from_eeg Regress out EOG components from EEG data
• reject_channel_eeg Reject noisy EEG channels
• remove_noise_ic_eeg Remove noise ICs from EEG data
• vb_posfile_maker Make POS-MAT file from old positioning files(.digit.mat, megpos.mat).
• vb_cb_clip_trigger clip trigger as a callback function of vb_do_mark_trigger
• vb_eegfile_add_position overwrite position data from POS-MAT file for EEG-MAT file
• vb_job_eeg_gateway This is a gateway function to job_eeg.
• vb_megfile_write_pretrigger Overwrite pretrigger of MEG data
• vb_msrmnt_make_trial_data Make trial data files by chopping continuous MEG or EEG data
• vb_meg_sensor_to_mri Transform MEG sensor position to MRI space
• vbmeg_current_reconstruct_tr Current reconstruction for each trial using Bayesian inverse filter
• bayes_parm_editor bayes_parm_editor controller
• bm_edit_app_callback callback function. This funcion is called when gui is operated.
• vb_signal_processor_save_settings Save batch file(.proc.mat).
• vb_trial_extractor_output_file Create trial MEG/EEG-MAT file.
• vb_trial_extractor_save_parm Save parameter
• project_file_mgr This function manages project file.
• project_mgr_builder_add Create new batch builder
• project_mgr_builder_close This is called by external object.
• project_mgr_builder_copy Copy batch builder
• project_mgr_builder_remove Remove batch builder
• project_mgr_load_project_file load project file.
• vb_job_leadfield_old Make leadfield
• vb_job_brain_add_mni_tal_coord Add MNI and Talairach coordinate value to Cortical model file.
• vb_job_brain_add_sphcoord Import FreeSurfer's sphere coordinate into cortical surface file.
• vb_job_brain_std2sbj Make smooth cortex from standard brain mask
• vb_job_brain_subj Make whole brain data (cortex sheet) by reducing BV/FS surface data.
• vb_job_dipole Dipole estimation by minimum error search
• vb_job_face
• vb_job_inflate Make inflated cortical surface model.
• vb_job_normal_stat Calculate normal statics of original BV brain and make reduced model
• vb_job_reduced_cortex Make reduced cortex without corpus region
• vb_job_smooth_cortex Make smooth cortex from brain model by morphological smoothing
• vb_job_brain Convert FreeSurfer data to VBMEG format.
• vb_job_head_3shell Make 1 shell or 3 shell surface model for MEG/EEG
• vb_job_leadfield Calculate leadfield matrix and create leadfiled file (.basis.mat).
• vb_head_join_files join plural single layer head files to single head file serially-concatenated
• vb_headinfo_save save to
• vb_util_join_head_files join plural "single layer" head files and make single head file
• vb_util_make_omega_file Make omega file which extension is '.omega.mat'. The omega file is one of head_files which is added Omega
• vb_prepare_bem Preparation for leadfield BEM calculation
• vb_job_leadfield_meg_bem actual worker function for MEG-BEM
• vb_job_leadfield_meg_harmonics actual worker function for MEG SPHERICAL HARMINICS
• dmri_connect_parm_calc Compute binarised anatomical connectivity matrix and fiber length matrix
• dmri_fiber_track_prob_specific_pair Stream lines tracking and save connection.
• make_std_brain_model Make standard brain from ICBM152

SOURCE CODE

0001 function [result] = vb_save(varargin)
0002 % Save variables into mat-file by MATLAB version 6 format. (Append mode)
0003 %   vb_save(filename, 'V', 'XX', ... )
0004 % [IN]  varargin : variable name string. (varargin{1} = filename)
0005 % [OUT] result   : SUCCESS or FAILURE;
0006 %
0007 % Example:
0008 %  vb_save(filename, 'V', 'XX', ... )
0009 % Memo:
0010 %  if specified file already exists, variable will be appended to the file.
0011 %   @see vbmeg.m where "vbmeg_saving_version" is set
0012 % History:
0013 %   ****-**-** (****) initial version
0014 %   2009-07-06 (Sako) changed specification of the default version
0015 %
0016 % Copyright (C) 2011, ATR All Rights Reserved.
0017 % License : New BSD License(see VBMEG_LICENSE.txt)
0018 
0019 global vbmeg_saving_version
0020 
0021 result = FAILURE;
0022 
0023 if nargin <= 1, return; end
0024 
0025 % extension change to '.mat'
0026 file_name = varargin{1};
0027 
0028 % [PATH, NAME, EXT] = fileparts(file_name);
0029 [PATH, NAME, EXT] = vb_get_file_parts(file_name);
0030 if ~isempty(PATH) && ~exist(PATH, 'dir')
0031     vb_mkdir(PATH);
0032     vb_disp(['Create directory: ' PATH]);
0033 end
0034 
0035 EXT = '.mat';
0036 file_name = fullfile(PATH, [NAME, EXT]);
0037 
0038 num_variable = length(varargin)-1;
0039 
0040 compatible_option = vbmeg_saving_version;
0041 
0042 % check file existance on caller workspace
0043 exist_command = ['exist(''' file_name ''', ''file'')'];
0044 if evalin('caller', exist_command)
0045     append_mode = '-append';
0046 else
0047     append_mode = '';
0048 end
0049 
0050 % make save command string
0051 save_command = ...
0052             ['save ' file_name, ' ', ...
0053                      append_mode ' ', ...
0054                      compatible_option];
0055 for k=1:num_variable
0056     save_command = [save_command ' ' varargin{k+1}];
0057 end
0058 
0059 % execute save command on caller workspace.
0060 evalin('caller', save_command);
0061 
0062 result = SUCCESS;