Master index
| Master index |
Index for vbmeg/functions/brain |
 vb_ScriptLoadSRF | vb_ScriptLoadSRF |
| vb_act_to_reduce_brain | acttivity map is transformed to act map in the reduced brain model |
| vb_add_patch_vertex | add new vertex by dividing triangle patch locally |
| vb_area_to_reduce_brain | Area index is transformed to area index in the reduced brain model |
| vb_asign_ext_area | asign external vertex area to base vertex area according to distance |
| vb_asign_neighbor_vertex | asign external vertex by base vertex according to distance |
| vb_calc_normal_average | average normal direction in the neighbor of root vertex |
| vb_calc_normal_variance | Deviation angle from average normal vector in the neighbor of root vertex |
| vb_calc_patch_area | --- get area of patches |
| vb_calc_subj_patch | Simple case: Find nearest point from 'VL' to 'VLs' |
| vb_copy_std_atlas_area | Copy atlas area/act files of standard brain to the same directory of brainfile |
| vb_copy_std_brain | Copy standard brain files to save_dir for group analysis |
| vb_cortex_area_index | Find left/right cortex indices of brain model 'V' of VBMEG. |
| vb_cortex_normal_average | average normal direction in the neighbor of vertex |
| vb_cortex_normal_statics | BV original brain neighbor for specified vertex |
| vb_cortex_normal_variance | average normal direction in the neighbor of vertex |
| vb_divide_patch | divide triangle by 4 : |
| vb_extract_cortex | Extract cortex area index of original FreeSurfer surface |
| vb_extract_peak | extract multiple local peak current |
| vb_find_big_triangle | Find triangle with large length |
| vb_find_local_peak | Pval の局所ピーク点を求める |
| vb_find_match_point | --- Find old vertex point corresponding to new vertex |
| vb_find_near_member | Find member vertex near the root point & make member list |
| vb_find_near_root | Find nearest root point for each vertex & make member list |
| vb_find_nearest_point_no_overlap | |
| vb_find_neighbor | find neighbor |
| vb_find_neighbor_all | Make neighbor index list within the radius R |
| vb_find_neighbor_val | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% |
| vb_find_no_overlap | try to find no overlap mapping |
| vb_find_no_overlap_divide | |
| vb_find_overlap | inverse distances between Vref and Vnew |
| vb_freesurfer_get_files | Get freesurfer files for brain_parm/gbrain_parm |
| vb_get_cortex_info | Make smooth cortex from brain model by morphological smoothing |
| vb_import_fsannot_file | Import FreeSurfer annotation file. |
| vb_index_trans | Return index translation table from the whole index space |
| vb_inflate_to_flat | Inflation model -> flat model |
| vb_inflate_to_flat_func | Project vertex point into 2D-plane |
| vb_make_brain_data | Make cortex data from BrainVoyager/FreeSurfer files |
| vb_make_brain_data2 | Make cortex data from BrainVoyager/FreeSurfer files |
| vb_make_brain_mni | Make cortex data from MNI standard brain for group analysis |
| vb_make_brain_std | Make cortex data for MNI standard brain |
| vb_make_flat_data | --- |
| vb_make_inflate_data | Incorporate inflated model of Brain Voyager/FreeSurfer. |
| vb_mean_normal_vector_1 | xxn : 平均法線方向 = 自分の周りの面の法線方向の平均 |
| vb_mean_normal_vector_2 | xxn : 平均法線方向 = 自分の周りの面の法線方向の平均( 面積で重み付け ) |
| vb_mean_normal_vector_3 | xxn : 平均法線方向 = 自分の周りの頂点の法線方向の平均 |
| vb_mean_normal_vector_4 | xxn : 平均法線方向 = 自分の周りの頂点の法線方向の平均 |
| vb_merge_member_list | average normal direction in the neighbor of root vertex |
| vb_neighbor_cos | Calculate direction COS between cortex normal vector and |
| vb_next_distance | Search next-point index and distance |
| vb_next_distance2 | Search next-point index and distance |
| vb_original_normal_statics | Find original vertex near the cortical vertex |
| vb_parent_std_brain_file_get | get template standard brain file path of specified brain_file. |
| vb_patch_select | select patch whose vertices consist given vertex points |
| vb_patch_select2 | select patch which include given vertex points |
| vb_reduce_cortex | Make new cortex model with reduced resolution |
| vb_reduce_neighbor_data | Generate the neighbor information of subregion (Vindx) from that of whole brain |
| vb_remove_corpus | Find central corpus callosal region to remove these region |
| vb_remove_corpus_run | Remove corpus region from cortex model |
| vb_smooth_filter_norm | smooth filter with normalization |
| vb_sparse_inv_distance | Compute sparse inverse distance matrix with (distance) < Rmax |
| vb_sq_distance | square distance matrix for X and Y |
| vb_step_filter | Calculate step function filter on cortical surface |