 brain_image_extract | delete non-brain tissues from an image of the whole head by FSL bet command. |
| calc_connection | Compute connection count and mean fiber length |
| calc_mean_streamlines | Averaging coordinates of streamlines for each ROI pairs |
| corvec | |
| dmri_add_images | Add images (fileA + fileB), then create output_file. |
| dmri_color_table_create_for_parcels | save color tabels |
| dmri_fiber_log_info_get | get fiber tracking logging directory list. |
| dmri_freesurfer_surf_view | Launch application to confirm cortical surface model |
| dmri_merge_parcels_wm | Merge parcel_all.nii.gz and wm.nii.gz and binarize it. |
| dmri_mrview | MRTrix viewer 'mrview' requires .nii file. |
| dmri_parcel_view | Launch parcellation viewer. |
| dmri_parcels_cover_all_vertices | Check if there are vertices that are not affiliated with either parcels. |
| dmri_plot_dmri_connections_matrix | Plot dmri connection between regions. |
| dmri_plot_dmri_connections_on_brain | PLOT DMRI CONNECTIONS ON BRAIN MODEL WITH COARSE REGIONS |
| dmri_system | This command creates bash script file and execute. |
| ecc_bvecs | ecc_bvecs(ecclog,bvecsfile) |
| finputcheck | finputcheck() - check Matlab function {'key','value'} input argument pairs |
| get_mask_coordinate | Get mm coordinates of mask voxels |
| get_pairs_undir | |
| make_membershipmat | Make a binary matrix that indicates parcel labels of brain model(~20000 vertices). |
| make_symmetry_matrix | Symmetrize connection strength matrix and fiber length matrix |
| read_asc | function [S, v, f] = read_asc(fname) |
| read_mrtrix_tracks | function: tracks = read_mrtrix_tracks (filename) |
| save_anat_matrix | Save annatomical connectivity matrix w.r.t. connection strength and |
| save_connection | Compute connection count and mean fiber length |
| save_mask_coordinate | Save mm coordinates of mask voxels |
| saveascii | SAVEASCII Save/display a matrix with specific format for each column. |
| write_clut | ok = write_clut(lindex, lrgb, lvals, clutfile, ) |
| write_label | ok = write_label(lindex, lxzy, lvals, labelfile, ) |
Master index