dmri_merge_parcels_wm

 Merge parcel_all.nii.gz and wm.nii.gz and binarize it.
 [Usage]
    dmri_merge_parcel_wm(parcel_all_file, wm_file, parcel_wm_file);
 [Input]
    parcel_all_file : parcel_all.nii.gz file
    wm_file         : wm.nii.gz
    parcel_wm_file  : merged and binarized file.

 Copyright (C) 2011, ATR All Rights Reserved.
 License : New BSD License(see VBMEG_LICENSE.txt)

0001 function dmri_merge_parcels_wm(parcel_all_file, wm_file, parcel_wm_file)
0002 % Merge parcel_all.nii.gz and wm.nii.gz and binarize it.
0003 % [Usage]
0004 %    dmri_merge_parcel_wm(parcel_all_file, wm_file, parcel_wm_file);
0005 % [Input]
0006 %    parcel_all_file : parcel_all.nii.gz file
0007 %    wm_file         : wm.nii.gz
0008 %    parcel_wm_file  : merged and binarized file.
0009 %
0010 % Copyright (C) 2011, ATR All Rights Reserved.
0011 % License : New BSD License(see VBMEG_LICENSE.txt)
0012 
0013 tmpfile = [tempname, '.nii.gz'];
0014 dmri_add_images(parcel_all_file, wm_file, tmpfile);
0015 
0016 cmd = ['fslmaths', ...
0017        ' ', tmpfile, ...
0018        ' -thr 0 -bin ', parcel_wm_file];
0019 dmri_system(cmd);
0020 
0021 disp(sprintf('mask file created: %s', parcel_wm_file));