< Master index Index for vbmeg/functions/common/morphology >

Index for vbmeg/functions/common/morphology

Matlab files in this directory:

 vb_back_thresholdCalculate threshold for background selection from MRI image
 vb_close_areaclosing of cortical 2D-surface
 vb_closing_2d穴を埋める
 vb_closing_3dclosing of 3D-image
 vb_cortex_fillfill inside of cortex surface
 vb_cut_areaErosion according to surface-distance
 vb_dilation_2dDilation : 境界から半径 R 以内の近傍点を加える
 vb_dilation_3dDilation : Add boundary neighbor points with radius R
 vb_dilation_3d_intDilation : Add boundary neighbor points with radius R
 vb_ellipsoid_check
 vb_erosion_2dErosion : 境界から半径 R 以内の近傍点を削除
 vb_erosion_3dErosion : Erase boundary points with radius R
 vb_erosion_3d_intErosion : Erase boundary points with radius R
 vb_exponential_estimateMSE estimation of exponential function parameters [a, b, c]
 vb_face_extractExtract face surface from MRI image
 vb_face_extract_trialMorfology operation for face extraction
 vb_face_to_maskMake mask from face vertex
 vb_fat_areaDilation according to surface-distance
 vb_find_geodesicfind minimum path along cortical surface
 vb_flood_fill_2d閾値'level'より小さい値を持つボクセルを'fillval'で塗りつぶす
 vb_flood_fill_3dflood_fill
 vb_gauss_filterGauss filtering of fMRI activity
 vb_gaussian_estimateParameter estimation of Gaussian distribution
 vb_get_3d_mask_pointGet mask points in mask image for specified slice
 vb_get_3d_mask_sliceGet single slice of 3D mask image
 vb_get_brain_maskGet brain/cortex mask image from subject brain mask file
 vb_get_cortex_histogramGet image intensity histogram
 vb_get_cortex_maskGet brain/cortex mask image from subject brain mask file
 vb_gray_2_maskmake mask image
 vb_histmin_estimatesmoothing histgram and find first local minimum
 vb_image_to_maskmake mask-image by thresholding
 vb_image_to_mask2make mask-image by thresholding
 vb_intersect_face_csfMake mask image for intersection of face and dilated CSF surfaces
 vb_make_inner_spherevb_make_inner_sphere
 vb_make_mask_from_vertexMake mask from vertex coordinate
 vb_make_smooth_cortex_surfMake cortex surface from brain mask image
 vb_make_upsample_vertexMake upsample coordinate to 1mm from vertex in 2mm voxel size
 vb_map_mask_imageTransform anatomical label in standard space to an individual brain
 vb_mask_image_sizeCalculate mask image size for subsampling step size
 vb_merge_areaMerge area for 2D cortex surface
 vb_morph_cortexsmoothing cortex combined left and right cortex
 vb_morphology_operationDilation/erosion are done consecutively according to Radius
 vb_mri_histgramcalculate MRI image histogram
 vb_neighbor_smooth_3daveraging by nearest neighbor
 vb_open_areaopening of cortex 2D-surface
 vb_opening_2d孤立点を削除
 vb_opening_3d孤立点を削除
 vb_rayleigh_estimateParameter estimation of Rayleigh distribution
 vb_reduce_vertexMake new cortex model with reduced resolution
 vb_remove_vertex_by_maskremove mask region from vertex 'V'
 vb_reverse_maskreverse mask pattern
 vb_smooth_cortexMake smooth cortex from brain model by morphological smoothing
 vb_smooth_cortex_LRsmoothing cortex and remove corpus area
 vb_subsample_3dsubsampling by half
 vb_surf_extractExtract boundary surface from mask image
 vb_surf_to_filled_maskMake filled mask image from surface cordinate
 vb_surf_to_maskMake surface to mask image
 vb_trans_surf_to_voxTransform 3D surface coordinate to Analyze_right [mm] to make mask image
 vb_trans_vox_to_surftransform [mm] coordinate to 3D surface coordinate in [m]
 vb_upsample_3dupsampling by two

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