Master index
| Master index |
Index for vbmeg/demo/tutorial_for_vbmeg2/advanced |
 apply_ica_eeg | Apply ICA to EEG data |
| apply_ica_meg | Apply ICA to MEG data |
| calculate_connectivity | Calculate connectivity matrix from the result of fiber tracking |
| calculate_fodf | Calculate fiber orientation density function (fodf) |
| calculate_roi_current | Calculate ROI-current |
| check_denoised_meg | Check denoised MEG data |
| check_imported_fmri | Check imported fMRI result |
| check_removing_eog_from_eeg | Check the result of removing EOG components from EEG data |
| check_removing_eog_from_meg | Check the result of removing EOG components from MEG data |
| classify_ic_eeg | Aucomatically classify ICs into brain activites and noise |
| classify_ic_meg | Aucomatically classify ICs into brain activites and noise |
| combine_trial_eeg | Combine trials across runs |
| combine_trial_meg | Combine trials across runs |
| common_average_eeg | Take common average |
| construct_brain_model | Construct brain model |
| construct_cortical_surface_model | Construct cortical surface model from T1 image using FreeSurfer |
| coregister_images | Coregister T1 and cortical surface models to FA images |
| correct_baseline_eeg | Correct baseline of EEG data |
| correct_baseline_meg | Correct baseline of MEG data |
| correct_bias_in_T1 | Correct bias in T1 image. |
| correct_classify_ic_eeg | Manually correct classification of ICs |
| correct_classify_ic_meg | Manually correct classification of ICs |
| correct_motion_in_dmri | Correct motion in dMRI |
| create_fa_from_dmri | Create Fractional Anisotropy (FA) image from dMRI |
| create_mask_for_fiber_tracking | Create mask for fiber tracking |
| create_movie | Create movie showing signal flows |
| create_project | Set paths and parameters for all the processes |
| detect_blink_from_eog | Detect trials in which blinks occurred for visual task |
| estimate_dynamics_model | Estimate linear dynaics model constrained by anatomical connectivity |
| estimate_source_current_eeg | Estimate source currents from EEG data |
| estimate_source_current_meeg | Estimate source currents from MEG data |
| estimate_source_current_meg | Estimate source currents from MEG data |
| extract_brain_from_T1 | Extract brain from T1 image |
| extract_brain_from_dmri | Make mask to extract brain from dMRI |
| fiber_tracking | Execute fiber tracking |
| fiber_tracking_for_movie | Execute fiber tracking for creating movie |
| filter_eeg | Filter EEG data |
| filter_meg | Filter MEG data |
| import_T1 | convert T1 DICOM files to NIfTI(.nii) |
| import_blink_from_eeg | Import blink information from EEG data to MEG data |
| import_dmri | Import dMRI |
| import_eeg | Construct brain model |
| import_fmri | Import fMRI result |
| import_meg | Import MEG data |
| make_model_for_movie | This function make |
| make_trial_eeg | Make trial data |
| make_trial_meg | Make trial data |
| parcel_cortical_surface | Parcel cortical surface |
| parcel_fa_volume | Parcel FA volume based on parcelled cortical surface |
| prepare_input_for_movie | Prepare the following variables for creating movie |
| prepare_leadfield_eeg | Prepare leadfield matrix |
| prepare_leadfield_meg | Prepare leadfield matrix |
| regress_out_eog_from_eeg | Regress out EOG components from EEG data |
| regress_out_eog_from_meg | Regress out EOG components from MEG data |
| reject_channel_eeg | Reject noisy EEG channels |
| reject_channel_meg | Reject noisy MEG channels |
| reject_trial_eeg | Reject trials in which blinks occurred |
| reject_trial_meg | Reject trials in which blinks occurred |
| remove_env_noise_meg | Remove environmental noise from MEG data using reference sonsor data by temporal PCA |
| remove_noise_ic_eeg | Remove noise ICs from EEG data |
| remove_noise_ic_meg | Remove noise ICs from MEG data |
| remove_noise_in_fa | Remove ambient noise in FA image by using brain mask extracted from T1 |
| segment_T1 | Segment T1 image. |
| separate_eeg | Separate trials into auditory, somatosensory, and visual tasks |
| separate_meg | Separate trials into auditory, somatosensory, and visual tasks |
| show_connectivity | Show connectivity |
| show_ic_eeg | Show ICs |
| show_ic_meg | Show ICs |
| show_source_current_eeg | Show source current estimated from EEG data |
| show_source_current_meeg | Show source current estimated from EEG-MEG data |
| show_source_current_meg | Show source current estimated from MEG data |
| show_trial_average_eeg | Show trial-averaged EEG data |
| show_trial_average_meg | Show trial-averaged MEG data |
| tutorial | % Preparation |