coregister_images

 Coregister T1 and cortical surface models to FA images

 Copyright (C) 2011, ATR All Rights Reserved.
 License : New BSD License(see VBMEG_LICENSE.txt)

0001 function coregister_images(p)
0002 % Coregister T1 and cortical surface models to FA images
0003 %
0004 % Copyright (C) 2011, ATR All Rights Reserved.
0005 % License : New BSD License(see VBMEG_LICENSE.txt)
0006 
0007 disp(mfilename);
0008 
0009 % Set input files
0010 
0011 % T1 image
0012 struct_brain_file = fullfile(p.proj_root, p.dmri_dirname, p.t1_dirname, [p.struct_name '_brain.nii.gz']);
0013 
0014 % Cortical surface model
0015 freesurfer_dir = fullfile(p.proj_root, p.fs_dirname, p.struct_name);
0016 
0017 % FA image
0018 fa_file = fullfile(p.proj_root, p.dmri_dirname, p.dmri_dirname, [p.FA_coreg_basename, '.nii.gz']);
0019 
0020 % Set output dirrectory
0021 output_dir = fullfile(p.proj_root, p.dmri_dirname, p.transform_info_dirname);
0022 
0023 % Coregister T1 and cortical surface models to FA images
0024 dmri_transwarp_info_create(freesurfer_dir, struct_brain_file, fa_file, output_dir);