dmri_process_FA_image_coreg_create

 Copyright (C) 2011, ATR All Rights Reserved.
 License : New BSD License(see VBMEG_LICENSE.txt)

0001 function dmri_process_FA_image_coreg_create(p)
0002 %
0003 % Copyright (C) 2011, ATR All Rights Reserved.
0004 % License : New BSD License(see VBMEG_LICENSE.txt)
0005 
0006 disp(mfilename);
0007 
0008 dwi_file        = fullfile(p.output_dir, p.dwi_dirname, [p.dwi_basename, '_m.nii.gz']);
0009 bval_file       = fullfile(p.output_dir, p.dwi_dirname, [p.dwi_basename, '_m.bval']);
0010 bvec_file       = fullfile(p.output_dir, p.dwi_dirname, [p.dwi_basename, '_m.bvec']);
0011 brain_mask_file = fullfile(p.output_dir, p.dwi_dirname, [p.dwi_basename, '_m_brain_mask.nii.gz']);
0012 
0013 output_dir      = fullfile(p.output_dir, p.dwi_dirname);
0014 output_name     = p.FA_coreg_basename;
0015 
0016 %
0017 % --- Create FA image for coregistration.
0018 %
0019 dmri_FA_image_create(dwi_file, bval_file, bvec_file, brain_mask_file, ...
0020                     output_dir, output_name);
0021 
0022 % output_dir/data_FA_coreg.nii.gz