job_edit_act

 Start up GUI for editing activity information

 --- Syntax
 function job_edit_act(brainfile,actfile)

 --- History
 2007-02-15 Taku Yoshioka
 2008-09-04 Taku Yoshioka
 2009-05-01 Taku Yoshioka
   'Replace' button was added. 
 2009-05-22 Taku Yoshioka
   Several buttons were added. 

 Copyright (C) 2011, ATR All Rights Reserved.
 License : New BSD License(see VBMEG_LICENSE.txt)

0001 function job_edit_act(brainfile,actfile)
0002 % Start up GUI for editing activity information
0003 %
0004 % --- Syntax
0005 % function job_edit_act(brainfile,actfile)
0006 %
0007 % --- History
0008 % 2007-02-15 Taku Yoshioka
0009 % 2008-09-04 Taku Yoshioka
0010 % 2009-05-01 Taku Yoshioka
0011 %   'Replace' button was added.
0012 % 2009-05-22 Taku Yoshioka
0013 %   Several buttons were added.
0014 %
0015 % Copyright (C) 2011, ATR All Rights Reserved.
0016 % License : New BSD License(see VBMEG_LICENSE.txt)
0017 
0018 %
0019 % Input parameter check
0020 %
0021 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0022 if nargin<2, actfile = []; end
0023 if nargin<1, brainfile = []; end
0024 
0025 inst_id = create_instance;
0026 if isempty(inst_id), return; end; 
0027 
0028 %
0029 % Create GUI and update plot
0030 %
0031 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0032 create_GUI(inst_id,brainfile,actfile);
0033 job_edit_act_update_spatialpattern(inst_id);
0034 
0035 %%%
0036 %%% Inner functions
0037 %%%
0038 
0039 function inst_id = create_instance
0040 % Create instance of GUI
0041 %
0042 % --- Syntax
0043 % inst_id = create_instance
0044 %
0045 % --- History
0046 % 2007-02-15 Taku Yoshioka
0047 
0048 global vbmeg_inst
0049 
0050 if isfield(vbmeg_inst,'editact'),
0051   for inst_id=1:vbmeg_inst.const.EDITACT_MAX
0052     if isempty(vbmeg_inst.editact{inst_id}), return; end;
0053   end
0054   fprintf(['The number of instances of ''job_edit_act''' ...
0055        ' GUIs reaches the maximum number.\n']);
0056   inst_id = [];
0057 elseif isfield(vbmeg_inst,'const'), 
0058   vbmeg_inst.editact = cell(vbmeg_inst.const.EDITACT_MAX,1);
0059   inst_id = 1;
0060 else
0061   fprintf(['''vbmeg_inst'' was not correct. You have to invoke' ...
0062        '''vbmeg'' to create an instance of VBMEG.\n']); 
0063   inst_id = []; 
0064 end
0065 
0066 function create_GUI(inst_id,brainfile,actfile)
0067 % Create GUI
0068 %
0069 % --- Syntax
0070 % create_GUI(inst_id,brainfile,actfile)
0071 %
0072 % --- History
0073 % 2007-02-15 Taku Yoshioka
0074 % 2008-09-04 Taku Yoshioka
0075 % 2009-05-01 Taku Yoshioka
0076 
0077 global vbmeg_inst;
0078 
0079 %
0080 % Initialize parameters
0081 %
0082 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0083 
0084 % Cortical surface model
0085 editact.brainfile = [];
0086 editact.V = [];
0087 editact.Vinf = []; 
0088 editact.F = [];
0089 editact.inf_C = [];
0090 editact.Vtal = [];
0091 editact.Vmni = [];
0092 editact.nextDD = [];
0093 editact.nextID = [];
0094 
0095 % Activity map
0096 editact.actfile = [];
0097 editact.xxP = []; 
0098 
0099 % Display parameters
0100 editact.ix = [];
0101 
0102 % Selected vertex
0103 %editact.ix = 1;
0104 
0105 %
0106 % GUI open
0107 %
0108 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0109 h_fig = open('job_edit_act.fig');
0110 set(h_fig,'HandleVisibility','on');
0111 drawnow; 
0112 set(h_fig,'Pointer','watch');
0113 
0114 %
0115 % Handles of GUI components
0116 %
0117 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0118 editact.h_fig = h_fig;
0119 editact.h_space = get_child_handle(h_fig,'axes1');
0120 editact.h_cbar = get_child_handle(h_fig,'colorbar');
0121 editact.ed2 = get_child_handle(h_fig,'radius');
0122 editact.ed4 = get_child_handle(h_fig,'tal_coord');
0123 editact.ed5 = get_child_handle(h_fig,'vertex_index');
0124 editact.ed6 = get_child_handle(h_fig,'color_scale');
0125 editact.lb1 = get_child_handle(h_fig,'activity_map_list');
0126 editact.pb2 = get_child_handle(h_fig,'clear');
0127 editact.pb3 = get_child_handle(h_fig,'average');
0128 editact.pb4 = get_child_handle(h_fig,'maximum');
0129 editact.pb5 = get_child_handle(h_fig,'histogram');
0130 editact.pb6 = get_child_handle(h_fig,'gaussian');
0131 editact.pb7 = get_child_handle(h_fig,'step_function');
0132 editact.pb8 = get_child_handle(h_fig,'registration');
0133 editact.pb9 = get_child_handle(h_fig,'delete');
0134 editact.pb11 = get_child_handle(h_fig,'normalize');
0135 editact.pb12 = get_child_handle(h_fig,'undo');
0136 editact.pb13 = get_child_handle(h_fig,'print');
0137 editact.pb15 = get_child_handle(h_fig,'replace');
0138 editact.pb16 = get_child_handle(h_fig,'left_button');
0139 editact.pb17 = get_child_handle(h_fig,'right_button');
0140 editact.pb18 = get_child_handle(h_fig,'top_button');
0141 editact.pb19 = get_child_handle(h_fig,'bottom_button');
0142 editact.cb1 = get_child_handle(h_fig,'left_hemi');
0143 editact.cb2 = get_child_handle(h_fig,'right_hemi');
0144 editact.rb1 = get_child_handle(h_fig,'talairach');
0145 editact.rb2 = get_child_handle(h_fig,'mni');
0146 editact.operation_text   = get_child_handle(h_fig,'operation_text');
0147 editact.zt   = get_child_handle(h_fig,'zoom_toggle');
0148 editact.model_type_inflate_rb = get_child_handle(h_fig,'inflate');
0149 editact.model_type_fold_rb = get_child_handle(h_fig,'folded');
0150 editact.load_cortex_menu ...
0151     = get_child_handle(get_child_handle(h_fig,'file_menu'), ...
0152                        'load_cortex_menu');
0153 editact.load_actmap_menu ...
0154     = get_child_handle(get_child_handle(h_fig,'file_menu'), ...
0155                        'load_actmap_menu');
0156 editact.loaded_files_menu ...
0157     = get_child_handle(get_child_handle(h_fig,'file_menu'), ...
0158                        'loaded_files_menu');
0159 editact.close_menu ...
0160     = get_child_handle(get_child_handle(h_fig,'file_menu'), ...
0161                        'close_menu');
0162 editact.manual_menu ...
0163     = get_child_handle(get_child_handle(h_fig,'help_menu'), ...
0164                        'manual');
0165     
0166 % Set GUI values
0167 set(editact.ed2,'String','6');
0168 set(editact.lb1,'Value',1);
0169 
0170 editact.plot_parm = vb_set_plot_parm;
0171 editact.plot_parm.index = [];
0172 editact.plot_parm.LRflag = 'LR';
0173 
0174 % Initialize GUI components
0175 set(editact.h_space,'XTick',[],'YTick',[]);
0176 set(editact.h_cbar,'XTick',[],'YTick',[]);
0177 
0178 %
0179 % Callback functions
0180 %
0181 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0182 inst_str = num2str(inst_id); 
0183 editact_str = ['vbmeg_inst.editact{' inst_str '}'];
0184 
0185 % Remove instance after window close
0186 command = ['global vbmeg_inst; '...
0187        'vbmeg_inst.editact{' inst_str '}=[];'];
0188 set(h_fig,'DeleteFcn',command);
0189 
0190 % Change filter radius
0191 command = ['job_edit_act_change_radius(' inst_str ');']; 
0192 set(editact.ed2,'Callback',command);
0193 
0194 % Change vertex index
0195 command = ['job_edit_act_change_vertex(' inst_str ');']; 
0196 set(editact.ed5,'Callback',command);
0197 
0198 % Clear activity map
0199 command = ['job_edit_act_clear(' inst_str ');'];
0200 set(editact.pb2,'Callback',command);
0201 
0202 % Replace activity map
0203 command = ['job_edit_act_replace(' inst_str ');'];
0204 set(editact.pb15,'Callback',command);
0205 
0206 % Average activity maps
0207 command = ['job_edit_act_average(' inst_str ');'];
0208 set(editact.pb3,'Callback',command);
0209 
0210 % Maximum activity maps
0211 command = ['job_edit_act_maximum(' inst_str ');'];
0212 set(editact.pb4,'Callback',command);
0213 
0214 % Display histogram
0215 command = ['job_edit_act_plot_histogram(' inst_str ');'];
0216 set(editact.pb5,'Callback',command);
0217 
0218 % Apply Gaussian filter
0219 command = ['job_edit_act_gauss_filter(' inst_str ');'];
0220 set(editact.pb6,'Callback',command);
0221 
0222 % Apply step function filter
0223 command = ['job_edit_act_step_filter(' inst_str ');'];
0224 set(editact.pb7,'Callback',command);
0225 
0226 % Activity map registration
0227 command = ['job_edit_act_registration(' inst_str ');'];
0228 set(editact.pb8,'Callback',command);
0229 
0230 % Delete activity map
0231 command = ['job_edit_act_delete(' inst_str ');'];
0232 set(editact.pb9,'Callback',command);
0233 
0234 % Normalize
0235 command = ['job_edit_act_normalize(' inst_str ');'];
0236 set(editact.pb11,'Callback',command);
0237 
0238 % Undo
0239 command = ['job_edit_act_undo(' inst_str ');'];
0240 set(editact.pb12,'Callback',command);
0241 
0242 % Print
0243 command = ['job_edit_act_print_spatialpattern(' inst_str ');'];
0244 set(editact.pb13,'Callback',command);
0245 
0246 % Zoom
0247 command = ['job_edit_act_change_zoom(' inst_str ');'];
0248 set(editact.zt, 'Callback', command);
0249 if vb_matlab_version('<=', '7.5.0')
0250     set(editact.zt, 'Visible', 'on');
0251 else
0252     str       = get(editact.operation_text, 'String');
0253     zoom_help = '   Zoom: mouse wheel';
0254     set(editact.operation_text, 'String', [str, zoom_help]);
0255     set(editact.zt, 'Visible', 'off');
0256 end
0257 
0258 % Change presented hemisphere
0259 command = ['job_edit_act_change_hemi(' inst_str ');'];
0260 set(editact.cb1,'Callback',command);
0261 set(editact.cb2,'Callback',command);
0262 
0263 % Model type
0264 model_type_group = [editact.model_type_inflate_rb,
0265                     editact.model_type_fold_rb];
0266 command = ['job_edit_act_change_modeltype(' inst_str ');'];
0267 set(model_type_group, 'Callback', command);
0268 set(model_type_group, 'Value', 0); % both off
0269 set(editact.model_type_inflate_rb,'Value',1);
0270 
0271 % Load cortical surface model
0272 command = ['[brain_dir,brain_file] = vb_file_select' ...
0273            '({''.brain.mat''},''Load cortical model'');' ...
0274            'if ~isempty(brain_file), ' ...
0275        'job_edit_act_load_cortex(' inst_str ',' ...
0276            '[brain_dir filesep brain_file{1}]); end'];
0277 set(editact.load_cortex_menu, 'Callback', command);
0278 
0279 command = ['vb_browser_show(''' which('job_edit_act.html') ''');'];
0280 set(editact.manual_menu, 'Callback', command);
0281 
0282 % Load activity map file
0283 command = ['[act_dir,act_file] = vb_file_select' ...
0284            '({''.act.mat''},''Load activity map file'');' ...
0285            'if ~isempty(act_file), ' ...
0286        'job_edit_act_load_actfile(' inst_str ',' ...
0287            '[act_dir filesep act_file{1}]); end'];
0288 set(editact.load_actmap_menu, 'Callback', command);
0289 %command = ['job_edit_act_select_file(' inst_str ');'];
0290 %set(editact.pb10,'Callback',command);
0291 
0292 % Show loaded files
0293 command = ['job_edit_act_show_loaded_files(' inst_str ');']; 
0294 set(editact.loaded_files_menu, 'Callback', command);
0295 
0296 % Close window
0297 command = 'close'; 
0298 set(editact.close_menu,'Callback',command);
0299 
0300 % Angle
0301 command = ['job_edit_act_change_angle(' inst_str ',''left'');'];
0302 set(editact.pb16,'Callback',command);
0303 command = ['job_edit_act_change_angle(' inst_str ',''right'');'];
0304 set(editact.pb17,'Callback',command);
0305 command = ['job_edit_act_change_angle(' inst_str ',''top'');'];
0306 set(editact.pb18,'Callback',command);
0307 command = ['job_edit_act_change_angle(' inst_str ',''bottom'');'];
0308 set(editact.pb19,'Callback',command);
0309 
0310 % Radio button check
0311 command = ['job_edit_act_change_tal(' inst_str ');'];
0312 set(editact.rb1,'Callback',command);
0313 command = ['job_edit_act_change_mni(' inst_str ');'];
0314 set(editact.rb2,'Callback',command);
0315 
0316 % Color scale
0317 command = ['job_edit_act_change_color_scale(' inst_str ');'];
0318 set(editact.ed6,'Callback',command);
0319 
0320 %
0321 % Properties of axis for cortex plot
0322 %
0323 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0324 set(h_fig,'Renderer','zbuffer');
0325 
0326 %
0327 % Set instance
0328 %
0329 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0330 vbmeg_inst.editact{inst_id} = editact;
0331 
0332 % Set pointer to arrow
0333 set(h_fig,'Pointer','arrow');
0334 
0335 % not to show colorbar warning
0336 warning('off', 'MATLAB:colorbar:DeprecatedV6Argument');
0337 
0338 %
0339 % Load cortical surface model
0340 %
0341 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0342 if ~isempty(brainfile),
0343   job_edit_act_load_cortex(inst_id,brainfile);
0344 end
0345 
0346 %
0347 % Load estimated current
0348 %
0349 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
0350 if ~isempty(actfile),
0351   job_edit_act_load_actfile(inst_id,actfile);
0352 end