test_dmri_image_transform

0001 
0002 transinfo_dir = '/home/cbi-data4/rhayashi/DWI/test_trans_form_info';
0003 
0004 
0005 % freesurfer brain to struct brain
0006 direction = 'fs2struct'
0007 from_file = '/home/cbi-data4/rhayashi/DWI/test_dti_freesurfer_run/Sub08/mri/brain.nii.gz';
0008 to_file   = '/home/cbi-data4/rhayashi/DWI/test_dti_image_transform/struct_brain_source_is_fsbrain.nii.gz';
0009 to_ref_file = '/home/cbi-data4/rhayashi/DWI/test_job_t1_preprocess/struct_brain.nii.gz';
0010 dmri_image_transform(from_file, to_file, to_ref_file, ...
0011                             direction, transinfo_dir);
0012 
0013 % struct brainto FA
0014 direction = 'struct2fa'
0015 from_file   = '/home/cbi-data4/rhayashi/DWI/test_job_t1_preprocess/struct_brain.nii.gz';
0016 to_file     = '/home/cbi-data4/rhayashi/DWI/test_dti_image_transform/nodif_fa_brain.nii.gz';
0017 to_ref_file = '/home/cbi-data4/rhayashi/te1-face/fsl/Sub08/dti_rot_mod/data_FA.nii.gz';
0018 dmri_image_transform(from_file, to_file, to_ref_file, ...
0019                             direction, transinfo_dir);
0020 
0021 % struct brain mask to FA(with no interpolation option)
0022 direction = 'struct2fa_nointerp'
0023 from_file   = '/home/cbi-data4/rhayashi/DWI/test_job_t1_preprocess/struct_brain_mask.nii.gz';
0024 to_file     = '/home/cbi-data4/rhayashi/DWI/test_dti_image_transform/nodif_fa_brain_mask.nii.gz';
0025 to_ref_file = '/home/cbi-data4/rhayashi/te1-face/fsl/Sub08/dti_rot_mod/data_FA.nii.gz';
0026 dmri_image_transform(from_file, to_file, to_ref_file, ...
0027                             direction, transinfo_dir);