0001
0002
0003
0004
0005 root = '/home/cbi/rhayashi/temp/dynamics_movie/data';
0006
0007
0008 load('~/dynamics_movie/estimation_result.mat', 'MAR', 'Zact');
0009
0010
0011 Npairs = 100;
0012 current_threshold = 0.05;
0013 Econ = MAR-diag(diag(MAR));
0014 [parcel_to_list,parcel_from_list] = dmri_select_pairs_for_movie(Zact, Econ, Npairs, current_threshold);
0015
0016 fprintf('Number of pairs : %d\n', length(parcel_to_list));
0017
0018 dmri_file = fullfile(root, '/dmri/connectivity/connectivity.dmri.mat');
0019 parcel_dir = fullfile(root, '/dmri/parcels');
0020 mif_file = fullfile(root, '/dmri/fibertrack/CSD6.mif');
0021 mask_file = fullfile(root, '/dmri/fibertrack/wm.nii.gz');
0022 fa_gz_file = fullfile(root, '/dmri/DWI/data_FA.nii.gz');
0023 trans_info_dir = fullfile(root, '/dmri/transwarp_info');
0024 fs_brain_gz_file = fullfile(root, '/freesurfer/Subject/mri/brain.nii.gz');
0025
0026
0027
0028 output_dir = '~/dynamics_movie';
0029
0030
0031
0032
0033
0034
0035 process_host = {'cbi-node01g', 'cbi-node02g','cbi-node03g'};
0036
0037
0038 Nworker = 20;
0039
0040 dmri_fiber_track_prob_specific_pair(parcel_dir, parcel_from_list, parcel_to_list, ...
0041 mif_file, mask_file, ...
0042 fa_gz_file, fs_brain_gz_file, trans_info_dir, dmri_file, ...
0043 output_dir, process_host, Nworker);
0044
0045
0046