Set parameters for fMRI fmri_parm = vb_set_fmri_parm 2016/07/26 O.Yamahista Copyright (C) 2011, ATR All Rights Reserved. License : New BSD License(see VBMEG_LICENSE.txt)
0001 function fmri_parm = vb_set_fmri_parm 0002 % Set parameters for fMRI 0003 % fmri_parm = vb_set_fmri_parm 0004 % 0005 % 2016/07/26 O.Yamahista 0006 % 0007 % Copyright (C) 2011, ATR All Rights Reserved. 0008 % License : New BSD License(see VBMEG_LICENSE.txt) 0009 0010 % 0011 % --- Standard parameters 0012 % 0013 0014 % SPM result file (SPM.mat) 0015 % (absolute path) 0016 fmri_parm.SPMmat_file = 'SPM.mat'; 0017 fmri_parm.SPMmapmode = 'mni2subj'; % SPM result map mode(fMRI coord to BrainModel) 0018 % 'mni2mni' : 0019 % 'mni2subj' : default(Need sn.mat file) 0020 % 'subj2subj' 0021 0022 % SPM normalization file 0023 fmri_parm.spm_normalization_file = '_sn.mat'; 0024 0025 % Postfix of registration key 0026 fmri_parm.keys_postfix = ''; 0027 0028 % Brain file(relative path from proj_root) 0029 fmri_parm.brain_file = 'Subject.brain.mat'; 0030 fmri_parm.act_file = 'Subject.act.mat'; 0031 fmri_parm.area_file = 'Subject.area.mat'; 0032 0033 0034 % 0035 % --- Advanced parameters 0036 % Do not change, unless you understand the meaning of the parameters!! 0037 % 0038 fmri_parm.Tthres = 3; 0039 fmri_parm.PSthres = 0.5; 0040 fmri_parm.Rthres = 3;