vb_test_std_brain

 vb_test_std_brain

 Make subject cortical surface from standard brain model
   by using spatial normalization file made by SPM

    vb_job_brain_model_std2sbj(proj_root,brain_parm)
 --- Input 
 proj_root  : root directory for output data file

 brain_parm : parameter structure
 - Input file (absolute path)
 brain_parm.std_brain   : Standard brain file
 brain_parm.spm_normalization_file : Spatial normalization file (SPM *sn.mat)
 brain_parm.analyze_file: MRI T1 image file (Analyze/NIFTI)

 - Output file (relative path from proj_root)
 brain_parm.brain_file  : brain_file 
 brain_parm.area_file   : area_file  
 brain_parm.act_file    : act_file   

 Copyright (C) 2011, ATR All Rights Reserved.
 License : New BSD License(see VBMEG_LICENSE.txt)

0001 % vb_test_std_brain
0002 %
0003 % Make subject cortical surface from standard brain model
0004 %   by using spatial normalization file made by SPM
0005 %
0006 %    vb_job_brain_model_std2sbj(proj_root,brain_parm)
0007 % --- Input
0008 % proj_root  : root directory for output data file
0009 %
0010 % brain_parm : parameter structure
0011 % - Input file (absolute path)
0012 % brain_parm.std_brain   : Standard brain file
0013 % brain_parm.spm_normalization_file : Spatial normalization file (SPM *sn.mat)
0014 % brain_parm.analyze_file: MRI T1 image file (Analyze/NIFTI)
0015 %
0016 % - Output file (relative path from proj_root)
0017 % brain_parm.brain_file  : brain_file
0018 % brain_parm.area_file   : area_file
0019 % brain_parm.act_file    : act_file
0020 %
0021 % Copyright (C) 2011, ATR All Rights Reserved.
0022 % License : New BSD License(see VBMEG_LICENSE.txt)
0023 
0024 clear all
0025 
0026 % data directory
0027 Mat_dir = [getenv('MATHOME') ];
0028 std_dir = [Mat_dir '/Standard_brain/std_brain'];
0029 
0030 % - Input file (absolute path)
0031 
0032 % standard brain cortex model
0033 brain_parm.std_brain = [std_dir '/ch2_std.brain.mat'];
0034 brain_parm.analyze_file = [Mat_dir '/NH_SEF/NH_brain/3D.hdr'];
0035 brain_parm.spm_normalization_file = [Mat_dir '/NH_SEF/NH_brain/3D_sn.mat'];
0036 
0037 proj_root = [Mat_dir '/NH_SEF/test'];;
0038 
0039 % - Output file (relative path from proj_root)
0040 brain_parm.brain_file = 'test.brain.mat';
0041 brain_parm.area_file  = 'test.area.mat';
0042 brain_parm.act_file   = 'test.act.mat';
0043 
0044 vb_job_brain_model_std2sbj(proj_root,brain_parm);
0045 
0046 vb_check_inflate_model(proj_root,brain_parm);
0047 %vb_check_brain_model(proj_root,brain_parm);